URI*
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http://edamontology.org
http://edamontology.org
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Bug database
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https://github.com/edamontology/edamontology/issues
https://github.com/edamontology/edamontology/issues
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Contact*
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Jon Ison (jison@bioinformatics.dtu.dk) Hervé Ménager (hmenager@pasteur.fr) Matúš Kalaš (matus.kalas@uib.no) Edam Developers (edamontology-developers@lists.sourceforge.net)
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Submission date
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June 18, 2020
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Depiction
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http://edamontology.org/EDAMconcepts.png
http://edamontology.org/EDAMconcepts.png
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Deprecated
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false
See more...
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Description*
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EDAM is a simple ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM provides a set of terms with synonyms and definitions, organised into an intuitive hierarchy for convenient use.
See more...
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Documentation
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http://edamontology.org/page
http://edamontology.org/page
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Example of resource
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http://edamontology.org/topic_3519
See more...
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Contributor
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Veit Schwämmle |
Creator
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Matúš Kalaš Hervé Ménager Jon Ison |
Formality level
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http://w3id.org/nkos/nkostype#ontology
http://w3id.org/nkos/nkostype#ontology
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License
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Representation language*
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OWL
See more...
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Syntax
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http://www.w3.org/ns/formats/RDF_XML
http://www.w3.org/ns/formats/RDF_XML
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Prior version
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Homepage
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http://edamontology.org/page
http://edamontology.org/page
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Other identifier
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http://dx.doi.org/10.1093/bioinformatics/btt113
http://dx.doi.org/10.1093/bioinformatics/btt113
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Indexed or included in catalog or repository
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https://biosharing.org/bsg-s000275
https://biosharing.org/bsg-s000275
https://agroportal.lirmm.fr/
agroportal.lirmm.fr
http://www.ontobee.org/ontology/EDAM
http://www.ontobee.org/ontology/EDAM
http://www.ebi.ac.uk/ols/ontologies/edam
http://www.ebi.ac.uk/ols/ontologies/edam
http://aber-owl.net/ontology/EDAM
http://aber-owl.net/ontology/EDAM
http://bioportal.bioontology.org/ontologies/EDAM/
http://bioportal.bioontology.org/ontologies/EDAM/
https://vest.agrisemantics.org/content/edam-bioinformatics-operations-data-types-formats-identifiers-and-topics
https://vest.agrisemantics.org/content/edam-bioinformatics-operations-data-types-formats-identifiers-and-topics
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Generic type
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http://omv.ontoware.org/2005/05/ontology#DomainOntology
http://omv.ontoware.org/2005/05/ontology#DomainOntology
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Known usage
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EDAM is suitable for large-scale semantic annotations and categorization of diverse bioinformatics resources. EDAM is also suitable for diverse application including for example within workbenches and workflow-management systems, software distributions, and resource registries.
See more...
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Mailing list
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http://elixirmail.cbs.dtu.dk/mailman/listinfo/edam
See more...
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More permissions
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We recommend, however, that while EDAM is being actively maintained by its authors, substantial derived work, major modifications (especially conceptual and semantic), and re-definitions of concepts and other content (e.g. additional constraints on EDAM concepts/owl:Class-es within owl:imports meant with universal validity, that would "close" some desired options of the open-world assumption) are consulted with the EDAM core developers beforehand at the time of consideration, and consistent solutions are sought in collaboration.
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Natural language
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Root of obsolete branch
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http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
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Preferred namespace prefix
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edam
See more...
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Access URL
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https://raw.githubusercontent.com/edamontology/edamontology/master/releases/EDAM.owl
https://raw.githubusercontent.com/edamontology/edamontology/master/releases/EDAM.owl
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Creation date*
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June 18, 2020
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Repository
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https://github.com/edamontology/edamontology
https://github.com/edamontology/edamontology
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Status*
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production
See more...
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URI Lookup Endpoint
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http://agroportal.lirmm.fr/search?ontologies=EDAM&require_exact_match=true&q=
search?ontologies=EDAM&require_exact_match=true&q=
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Created with
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OWL API
See more...
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Version information
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1.25
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