BioportalWebUi

URI*	http://edamontology.org http://edamontology.org
Bug database	https://github.com/edamontology/edamontology/issues https://github.com/edamontology/edamontology/issues
Contact*	Jon Ison (jison@bioinformatics.dtu.dk) Hervé Ménager (hmenager@pasteur.fr) Matúš Kalaš (matus.kalas@uib.no) Edam Developers (edamontology-developers@lists.sourceforge.net)
Object creation date property	http://purl.org/dc/elements/1.1/created http://purl.org/dc/elements/1.1/created
Submission date	September 24, 2024
Depiction	http://edamontology.org/EDAMconcepts.png http://edamontology.org/EDAMconcepts.png
Deprecated	false See more...
Description*	EDAM is a simple ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM provides a set of terms with synonyms and definitions, organised into an intuitive hierarchy for convenient use., EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data life cycle. Targetting usability by diverse users, the structure of EDAM is relatively simple, divided into 4 main sections: Topic, Operation, Data (incl. Identifier), and Format. See more...
Documentation	http://edamontology.org/page http://edamontology.org/page
Example of resource	http://edamontology.org/topic_3519 See more...
Contributor	Veit Schwämmle
Creator	Matúš Kalaš Hervé Ménager Jon Ison
Formality level	http://w3id.org/nkos/nkostype#ontology http://w3id.org/nkos/nkostype#ontology
License
Representation language*	OWL See more...
Syntax	http://www.iana.org/assignments/media-types/application/rdf+xml http://www.iana.org/assignments/media-types/application/rdf+xml
Has part (has views)	http://edamontology.org/identifiers http://edamontology.org/identifiers http://edamontology.org/obsolete http://edamontology.org/obsolete http://edamontology.org/events http://edamontology.org/events http://edamontology.org/formats http://edamontology.org/formats http://edamontology.org/bio http://edamontology.org/bio http://edamontology.org/properties http://edamontology.org/properties http://edamontology.org/data http://edamontology.org/data http://edamontology.org/operations http://edamontology.org/operations http://edamontology.org/topics http://edamontology.org/topics
Prior version	http://edamontology.org/1.25 http://edamontology.org/1.25
Homepage	http://edamontology.org/page http://edamontology.org/page
Other identifier	http://dx.doi.org/10.1093/bioinformatics/btt113 http://dx.doi.org/10.1093/bioinformatics/btt113
Indexed or included in catalog or repository	https://biosharing.org/bsg-s000275 https://biosharing.org/bsg-s000275 https://agroportal.lirmm.fr/ agroportal.lirmm.fr http://www.ontobee.org/ontology/EDAM http://www.ontobee.org/ontology/EDAM http://www.ebi.ac.uk/ols/ontologies/edam http://www.ebi.ac.uk/ols/ontologies/edam http://aber-owl.net/ontology/EDAM http://aber-owl.net/ontology/EDAM http://bioportal.bioontology.org/ontologies/EDAM/ http://bioportal.bioontology.org/ontologies/EDAM/ https://vest.agrisemantics.org/content/edam-bioinformatics-operations-data-types-formats-identifiers-and-topics https://vest.agrisemantics.org/content/edam-bioinformatics-operations-data-types-formats-identifiers-and-topics
Generic type	http://omv.ontoware.org/2005/05/ontology#DomainOntology http://omv.ontoware.org/2005/05/ontology#DomainOntology
Known usage	EDAM is suitable for large-scale semantic annotations and categorization of diverse bioinformatics resources. EDAM is also suitable for diverse application including for example within workbenches and workflow-management systems, software distributions, and resource registries. See more...
Logo	https://raw.githubusercontent.com/edamontology/edamontology/main/EDAM-logo-square.svg https://raw.githubusercontent.com/edamontology/edamontology/main/EDAM-logo-square.svg
Mailing list	http://elixirmail.cbs.dtu.dk/mailman/listinfo/edam See more...
Object modification date property	http://purl.org/dc/elements/1.1/modified http://purl.org/dc/elements/1.1/modified
More permissions	We recommend, however, that while EDAM is being actively maintained by its authors, substantial derived work, major modifications (especially conceptual and semantic), and re-definitions of concepts and other content (e.g. additional constraints on EDAM concepts/owl:Class-es within owl:imports meant with universal validity, that would "close" some desired options of the open-world assumption) are consulted with the EDAM core developers beforehand at the time of consideration, and consistent solutions are sought in collaboration. See more...
Natural language
Root of obsolete branch	http://www.geneontology.org/formats/oboInOwl#ObsoleteClass http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
Preferred namespace prefix	edam See more...
Access URL	https://raw.githubusercontent.com/edamontology/edamontology/master/releases/EDAM.owl https://raw.githubusercontent.com/edamontology/edamontology/master/releases/EDAM.owl
Creation date*	September 24, 2024
Repository	https://github.com/edamontology/edamontology https://github.com/edamontology/edamontology
Status*	production See more...
URI Lookup Endpoint	http://agroportal.lirmm.fr/search?ontologies=EDAM&require_exact_match=true&q= search?ontologies=EDAM&require_exact_match=true&q=
Created with	OWL API See more...
Version information	1.25-20240924T0027Z-unstable(1.26) See more...
Version IRI	http://edamontology.org/1.25-20240924T0027Z-unstable(1.26) http://edamontology.org/1.25-20240924T0027Z-unstable(1.26)

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