URI*
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http://purl.obolibrary.org/obo/agro-edit.owl
http://purl.obolibrary.org/obo/agro-edit.owl
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Abstract
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An ontology is a formal representation of a disciplinary domain, representing a semantic standard that can be employed to annotate data where key concepts are defined, as well as the relationships that exist between those concepts (Gruber, 2009). Ontologies provide a common language for different kinds of data to be easily interpretable and interoperable allowing easier aggregation and analysis.
The Agronomy Ontology (AgrO) provides terms from the agronomy domain that are semantically organized and can facilitate the collection, storage and use of agronomic data, enabling easy interpretation and reuse of the data by humans and machines alike.
To fully understand the implications of varying practices within cropping systems and derive insights, it is often necessary to pull together information from data in different disciplinary domains. For example, data on field management, soil, weather and crop phenotypes may need to be aggregated to assess performance of particular crop under different management interventions.
However, agronomic data are often collected, described, and stored in inconsistent ways, impeding data comparison, mining, interpretation reuse. The use of standards for metadata and data annotation play a key role in addressing these challenges. While the CG Core Metadata Schema provides a metadata standard to describe agricultural datasets, the Agronomy Ontology enables the description of agronomic data variables using standard terms.
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Accrual method
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Summit new terms submissions on GitHub issue tracker.
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Bug database
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https://github.com/AgriculturalSemantics/agro/issues
https://github.com/AgriculturalSemantics/agro/issues
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Knowledge representation paradigm
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Used BFO as a foundational ontology.
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Contact*
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Céline Aubert (c.aubert@cgiar.org) Marie Angélique Laporte (m.a.laporte@cgiar.org)
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Rights holder
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CGIAR (http://www.cgiar.org/)(https://ror.org/04c4bm785) |
Submission date
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November 2, 2022
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Curator
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Céline Aubert (CGIAR) |
Depiction
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http://www.lirmm.fr/~jonquet/documents/AgroPortal/AgroStructure.png
http://www.lirmm.fr/~jonquet/documents/AgroPortal/AgroStructure.png
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Deprecated
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false
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Description*
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AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities
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Documentation
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https://github.com/AgriculturalSemantics/agro
https://github.com/AgriculturalSemantics/agro
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Endorsed by
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CGIAR |
Example of resource
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http://purl.obolibrary.org/obo/AGRO_00000002
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Funded or sponsored by
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CGIAR |
Contributor
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Pier Luigi Buttigieg Céline Aubert Marie-Angélique Laporte |
Creator
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Elizabeth Arnaud Céline Aubert Medha Devare Marie-Angélique Laporte |
Formality level
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http://w3id.org/nkos/nkostype#ontology
http://w3id.org/nkos/nkostype#ontology
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License
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Representation language*
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OWL
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Syntax
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http://www.w3.org/ns/formats/RDF_XML
http://www.w3.org/ns/formats/RDF_XML
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Prior version
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Homepage
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https://bigdata.cgiar.org/resources/agronomy-ontology/
https://bigdata.cgiar.org/resources/agronomy-ontology/
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Other identifier
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https://doi.org/10.5281/zenodo.7274103
https://doi.org/10.5281/zenodo.7274103
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Indexed or included in catalog or repository
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https://agroportal.lirmm.fr/
agroportal.lirmm.fr
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Backward compatible
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Generic type
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http://omv.ontoware.org/2005/05/ontology#DomainOntology
http://omv.ontoware.org/2005/05/ontology#DomainOntology
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Key classes
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http://purl.obolibrary.org/obo/AGRO_01000000, http://purl.obolibrary.org/obo/AGRO_01000000
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Keywords
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agricultural experiment, agricultural processes, agricultural implement, fertilizers
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Known usage
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AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities.
See more...
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Logo
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https://bigdata.cgiar.org/wp-content/uploads/2019/09/AgrO-full-logo-600px.png
https://bigdata.cgiar.org/wp-content/uploads/2019/09/AgrO-full-logo-600px.png
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Metadata vocabulary used
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http://xmlns.com/foaf/0.1/
http://xmlns.com/foaf/0.1/
http://www.w3.org/2000/01/rdf-schema#
http://www.w3.org/2000/01/rdf-schema#
http://www.geneontology.org/formats/oboInOwl#
http://www.geneontology.org/formats/oboInOwl#
http://purl.org/dc/elements/1.1/
http://purl.org/dc/elements/1.1/
http://www.w3.org/2002/07/owl#
http://www.w3.org/2002/07/owl#
http://www.w3.org/2003/11/swrl#
http://www.w3.org/2003/11/swrl#
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Natural language
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Notes
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The Agronomy Ontology by CGIAR is licensed under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/).
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Root of obsolete branch
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http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
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Generally related to or relies on
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https://bioportal.bioontology.org/ontologies/CHEBI
https://bioportal.bioontology.org/ontologies/CHEBI
https://bioportal.bioontology.org/ontologies/UO
https://bioportal.bioontology.org/ontologies/UO
https://bioportal.bioontology.org/ontologies/OGMS
https://bioportal.bioontology.org/ontologies/OGMS
https://bioportal.bioontology.org/ontologies/IAO
https://bioportal.bioontology.org/ontologies/IAO
https://bioportal.bioontology.org/ontologies/OBI
https://bioportal.bioontology.org/ontologies/OBI
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Preferred namespace prefix
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agro
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Preferred namespace URI
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http://purl.obolibrary.org/obo/AGRO_
http://purl.obolibrary.org/obo/AGRO_
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Bibliographic reference
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http://ceur-ws.org/Vol-1747/IT205_ICBO2016.pdf
http://ceur-ws.org/Vol-1747/IT205_ICBO2016.pdf
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Publisher
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CGIAR |
Access URL
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http://purl.obolibrary.org/obo/agro.owl
http://purl.obolibrary.org/obo/agro.owl
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Creation date*
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November 2, 2022
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Repository
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https://github.com/AgriculturalSemantics/agro
https://github.com/AgriculturalSemantics/agro
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Status*
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alpha
See more...
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URI Lookup Endpoint
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http://agroportal.lirmm.fr/search?ontologies=AGRO&require_exact_match=true&q=
search?ontologies=AGRO&require_exact_match=true&q=
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Identifier pattern
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http://purl.obolibrary.org/obo/AGRO_[0-9]{8}
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Engineering methodology
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Follow the OBO Principle, used Protégé and the Ontology Development Kit.
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Created with
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http://protege.stanford.edu
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Version information
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1.0
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Version IRI
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http://purl.obolibrary.org/obo/agro/releases/2022-11-02/agro.owl
http://purl.obolibrary.org/obo/agro/releases/2022-11-02/agro.owl
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