ontologies
FALDO
Feature Annotation Location Description Ontology (FALDO)
OWL
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Last submission date December 13, 2018
Summary
Classes
Properties
Instances
Notes
Mappings
Widgets
Sparql

General information

FALDO is the Feature Annotation Location Description Ontology. It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources. The aim of this ontology is to describe the position of a sequence region or a feature. It does not aim to describe features or regions itself, but instead depends on resources such as the Sequence Ontology or the UniProt core ontolgy. See more...
Initial created on December 13, 2018. For additional information, contact Jerven Bolleman (jerven.bolleman@isb-sib.ch).

Languages

Keywords and classes

sequence ontology
annotation
data integration
sequence feature

Categories and subjects

Plant Genetic Resources
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FAIR score
Beta

Total score : 303.0 ( 63.0%)
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Submissions

Metrics

Identifiers

URI

http://biohackathon.org/resource/faldo
http://biohackathon.org/resource/faldo

Dates

Creation date

December 13, 2018

Submission date

December 13, 2018

Persons and organizations

Contact

Jerven Bolleman

Creator

Robert Buels
Joachim Baran
Francesco Strozzi
Robert Hoehndorf
Toshiaki Katayama
Raoul J. P. Bonnal
Michel Dumontier
Christopher J. Mungall
Jerven T. Bolleman
Peter J. A. Cock
Takatomo Fujisawa

Endorsed by

RDA Wheat Data Interoperability Guidelines

Other links

Projects and usage information

Projects using FALDO

Agrisemantics Map of Data Standards
RDA Wheat Interoperability Working Group

Known usage

FALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned “omics” areas.

Methodology and provenance

The fields Knowledge representation paradigm, Engineering methodology, Created with, Accrual method, Accrual periodicity... are empty

Community

Repository

https://github.com/OBF/FALDO
https://github.com/OBF/FALDO

Bug database

https://github.com/JervenBolleman/FALDO/issues
https://github.com/JervenBolleman/FALDO/issues

Groups

Wheat Data Interoperability working group

Content

Preferred namespace prefix

faldo

Example of resource

http://biohackathon.org/resource/faldo#CollectionOfRegions
http://biohackathon.org/resource/faldo#CollectionOfRegions

Visits

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