Experimental Factor Ontology

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Preferred Name	brainstem
Synonyms	accessory medullary lamina of pallidum lamina medullaris incompleta pallidi lamella pallidi incompleta Entire brainstem brain stem truncus encephalicus lamina pallidi incompleta lamina medullaris accessoria truncus encephali
Definitions	'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN10:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions). Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized]. Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted].
ID	http://purl.obolibrary.org/obo/UBERON_0002298
comment	'brainstem' is a loose term that sometimes refers to the ventral parts o the brain except for any part of the telencephalon - sometimes it includes the diencephalon or subpallial telencephalon structures (ISBN10:0471888893). Here we use it in a more restriced sense, to include only the medulla oblongata, pons (when present) and the midbrain tegmentum (following the ZFA definitions).
database_cross_reference	ABA:BS ZFA:0001707 MESH:D001933 NIF_GrossAnatomy:birnlex_1565 BAMS:BS http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png EFO:0001962 TAO:0002156 http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=236 NCIt:C12441 UMLS:C0006121 EMAPA:32678 NCIT:C12441 FMA:79876 MESH:A08.186.211.132 MA:0000169 CALOHA:TS-0093 http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png SNOMEDCT:180925009 VHOG:0001457 EV:0100241 MSH:D001933 MBA:343 BTO:0000146 Wikipedia:Brainstem http://www.snomedbrowser.com/Codes/Details/180925009 http://uri.neuinfo.org/nif/nifstd/birnlex_1565 http://en.wikipedia.org/wiki/Brainstem http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=236 http://linkedlifedata.com/resource/umls/id/C0006121
definition	Stalk-like part of the brain that includes amongst its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,MP,generalized]. Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted].
depicted_by	http://upload.wikimedia.org/wikipedia/commons/b/b7/Gray719.png
external_definition	Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain[ZFA,adopted][ZFA:0001707]. the stalk-like part of the brain that comprises the midbrain (aka mesencephalon), the pons (aka pons Varolii), and the medulla oblongata, and connects the cerebral hemispheres with the cervical spinal cord[MP] Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain.[TAO]
has_exact_synonym	Entire brainstem brain stem truncus encephalicus truncus encephali
has_obo_namespace	uberon
has_related_synonym	accessory medullary lamina of pallidum lamina medullaris incompleta pallidi lamella pallidi incompleta truncus encephalicus lamina pallidi incompleta lamina medullaris accessoria
homologous_in	http://purl.obolibrary.org/obo/NCBITaxon_7742
id	UBERON:0002298
in_subset	http://purl.obolibrary.org/obo/uberon#efo_slim http://purl.obolibrary.org/obo/uberon#vertebrate_core http://purl.obolibrary.org/obo/uberon#loose_concept http://purl.obolibrary.org/obo/uberon/core#uberon_slim http://purl.obolibrary.org/obo/uberon/core#pheno_slim http://purl.obolibrary.org/obo/uberon/core#efo_slim http://purl.obolibrary.org/obo/uberon#uberon_slim http://purl.obolibrary.org/obo/uberon/core#vertebrate_core
label	brainstem
notation	UBERON:0002298
part_of	http://purl.obolibrary.org/obo/UBERON_0000955
prefLabel	brainstem
treeView	http://purl.obolibrary.org/obo/UBERON_0000955
subClassOf	http://purl.obolibrary.org/obo/UBERON_0002616 http://purl.obolibrary.org/obo/UBERON_0010314
spatially_disjoint_from	http://purl.obolibrary.org/obo/UBERON_0002037

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Internal mappings

Mapping To	Ontology	Source
http://id.agrisemantics.org/gacs/C28350	Global Agricultural Concept Scheme	LOOM
http://purl.obolibrary.org/obo/UBERON_0002298	Cell Ontology	LOOM
http://purl.obolibrary.org/obo/UBERON_0002298	Cell Ontology	SAME_URI
http://purl.obolibrary.org/obo/TP_0000314	Thesaurus for Animal Physiology and Livestock Systems	LOOM

Interportal mappings

Delete	Mapping To	Ontology	Source	Relations
	http://purl.obolibrary.org/obo/BTO_0000146	http://bioportal.bioontology.org/ontologies/BTO	REST EFO	http://www.geneontology.org/formats/oboinowl#hasdbxref
	http://purl.obolibrary.org/obo/ZFA_0001707	http://bioportal.bioontology.org/ontologies/ZFA	REST EFO	http://www.geneontology.org/formats/oboinowl#hasdbxref

External mappings

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	There are currently no external mappings for this class.